For a NetWare server, follow the instructions in the following section of the GroupWise Installation Guide for your version of GroupWise:
GroupWise 8: Uninstalling the NetWare GroupWise Agents
in Installing GroupWise Agents
GroupWise 7: Uninstalling the NetWare GroupWise Agents
in Installing GroupWise Agents
Be sure to remove the migrated agents from the NetWare autoexec.ncf file so that the server does not try to start the migrated agents automatically when it is restarted.